Insights of clinical significance from solid tumor profiles with FoundationOneCDx.

Authors

null

Andreas M Heilmann

Foundation Medicine, Inc., Cambridge, MA

Andreas M Heilmann , Jonathan W. Riess , Molly McLaughlin-Drubin , James Creeden , Brian Michael Alexander , Rachel Erlich

Organizations

Foundation Medicine, Inc., Cambridge, MA, University of California Davis Comprehensive Cancer Center, Sacramento, CA

Research Funding

Pharmaceutical/Biotech Company

Background: FoundationOne CDx (F1CDx) is a US FDA-approved companion diagnostic test to identify patients who may benefit from treatment in accordance with the approved therapeutic product labeling for 28 drug therapies. Tumor profiling with F1CDx detects genomic findings with evidence of additional clinical significance. This study analyzes the breadth and impact of clinical decision insights from F1CDx clinical reports across solid tumors. Methods: F1CDx consecutive reports (n = 109,695) were retrospectively analyzed for the type and frequency of clinically significant predictive, prognostic, and diagnostic genomic alterations and signatures in common cancer types and across solid tumors. Predictive markers were defined as therapeutically relevant markers in drug labels or NCCN guidelines or targets of ESCAT evidence Tier I/II (Mateo et al., 2018; PMID: 30137196). Prognostic and diagnostic markers were determined in accordance with NCCN, ESMO, or WHO guidelines. We also describe the frequency and targets of interventional clinical trials with targeted therapies or immune checkpoint inhibitors that were matched to tumor profiles based on clinical or strong preclinical evidence. Results: Predictive genomic findings of clinical significance were identified in more than half of non-small cell lung cancer (NSCLC), colorectal cancer (CRC), breast cancer (BC), and melanoma (MEL) tissue samples; over a third of ovarian cancer (OC), urothelial carcinoma (UC), and head and neck squamous cell carcinoma (HNSCC); approximately a fourth of prostate cancer (PC), gastro-esophageal adenocarcinoma (GEA), cholangiocarcinoma (CA), and glioma (GL) samples; and one in 18 pancreatic adenocarcinoma (PA) samples (Table). Prognostic markers were reported for patients with NSCLC (18%), CRC (10%), BC (16%), PC (25%), CA (8.1%), MEL (24%), GL (74%), or HNSCC (7.1%). Diagnostic markers were frequently detected for patients with GL and noted for patients with BC, GEA, or MEL (Table). Interventional clinical trials were evidence-matched to most F1CDx tumor profiles (89%, range 82% in PC to 99% in PA), with the targets of approved therapies accounting for a small subset of targets in clinical development. Conclusions: F1CDx reports support clinical decision making by interpreting predictive, prognostic, and diagnostic markers according to professional guidelines as well as investigational markers for the enrollment in clinical trials.

Frequency of predictive, prognostic, and diagnostic markers of clinical significance by cancer type in F1CDx reports (N total reports, na not applicable).

Cancer Type
N
Predictive
Prognostic
Diagnostic
NSCLC
22152
59.8%
18.4%
na
CRC
13193
64.7%
10.3%
na
BC
11016
54.2%
16.3%
14.4%
OC
6999
36.2%
na
na
PC
6513
27.3%
24.7%
na
PA
6168
5.5%
na
na
GEA
4762
22.8%
na
6.2%
UC
3236
46.7%
na
na
CA
2901
24.0%
8.1%
na
MEL
2743
79.7%
24.1%
3.6%
GL
2350
24.1%
74.0%
80.6%
HNSCC
1787
38.4%
7.1%
na

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Abstract Details

Meeting

2022 ASCO Annual Meeting

Session Type

Poster Session

Session Title

Developmental Therapeutics—Molecularly Targeted Agents and Tumor Biology

Track

Developmental Therapeutics—Molecularly Targeted Agents and Tumor Biology

Sub Track

Tissue-Based Biomarkers

Citation

J Clin Oncol 40, 2022 (suppl 16; abstr 3126)

DOI

10.1200/JCO.2022.40.16_suppl.3126

Abstract #

3126

Poster Bd #

118

Abstract Disclosures