A genome-wide association study (GWAS) of progression-free survival (PFS) in metastatic breast cancer (MBC) patients treated with letrozole (L) with or without bevacizumab (B) in CALGB 40503.

Authors

Federico Innocenti

Federico Innocenti

The University of North Carolina at Chapel Hill, Chapel Hill, NC

Federico Innocenti , Kouros Owzar , Chen Jiang , Alexander Sibley , Flora Mulkey , Lisa A. Carey , Debu Tripathy , Bryan P. Schneider , William Thomas Barry , Eric P. Winer , Clifford A. Hudis , Howard L. McLeod , Maura N. Dickler

Organizations

The University of North Carolina at Chapel Hill, Chapel Hill, NC, Duke University Medical Center, Durham, NC, Duke Cancer Institute, Durham, NC, The University of Texas MD Anderson Cancer Center, Houston, TX, Indiana University School of Medicine, Indianapolis, IN, Dana-Farber Cancer Institute, Boston, MA, Memorial Sloan Kettering Cancer Center, New York, NY, Moffitt Cancer Center, Tampa, FL

Research Funding

NIH

Background: CALGB 40503 testedwhether therapy with B prolongs PFS when added to first-line L as treatment of hormone receptor-positive (HR+) MBC. We aimed to identify germline variants associated with clinical outcome. Methods: Postmenopausal women with HR+ MBC were randomized 1:1 in a multicenter, open-label, phase III trial of L (2.5 mg orally/day) with or without B (15 mg/kg IV every 3 weeks). 343 patients received treatment. The primary endpoint of the study was PFS. The addition of B resulted in a significant reduction in the hazard of progression (hazard ratio [HR] = 0.75, 95% CI = 0.59-0.96; p = 0.016) and a prolongation in median PFS from 15.6 to 20.2 months with L and L+B, respectively (Dickler MN et al., ASCO 2015). DNA was extracted from peripheral blood and genotyped on the Illumina OmniExpress Exome chip for ~700,000 single-nucleotide polymorphisms (SNPs). The association between SNPs and PFS in 210 patients of estimated European genetic ancestry was tested by a Cox proportional hazards model using B as a stratification factor. Results: Median PFS in genotyped patients was 17.9 months. The top ranked SNP was rs9916211 (HR 2.15, 1.58-2.92, p < 1.04x10-6). rs9916211 (C to T) is a common germline variant (16% frequency) located in close proximity (~4 Kb) of TMEM132E gene. Median PFS for patients with the CC, CT or TT genotypes of rs9916211 was 20.70 (17.7-24.4), 12.71 (10.9-18.2) or 2.33 (2.2-4.6) months, respectively. TMEM132E codes for transmembrane protein 132E. Germline variants in TMEM132E have been reported as genetic modifiers of the risk of breast cancer in menopausal women taking hormone replacement therapy (Rudolph A et al., 2013). Conclusions: To our knowledge, this is the first GWAS ever reported in HR+ MBC patients treated with L. The top hit is a common variant in TMEM132E and confers worse PFS. This study selects TMEM132E as a new putative determinant of MBC progression in HR+ patients treated with endocrine therapy. This result may point towards a role of gene modifiers of breast cancer risk as determinants of clinical outcome. Further replication in additional patients is required.

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Abstract Details

Meeting

2016 ASCO Annual Meeting

Session Type

Poster Session

Session Title

Breast Cancer—HER2/ER

Track

Breast Cancer

Sub Track

ER+

Clinical Trial Registration Number

NCT00601900

Citation

J Clin Oncol 34, 2016 (suppl; abstr 538)

DOI

10.1200/JCO.2016.34.15_suppl.538

Abstract #

538

Poster Bd #

26

Abstract Disclosures