BC Cancer - Vancouver, University of British Columbia, Vancouver, BC, Canada
Joao Paulo Solar Vasconcelos , Emma Titmuss , Fabio Navarro , Charles Abbott , Brendan Chia , James T. Topham , Gale Ladua , Tharani Krishnan , Daniela Hegebarth , Howard J Lim , Karamjit Gill , Sharlene Gill , Carl J. Brown , Amandeep (Anu) Ghuman , Adam Meneghetti , Daniel John Renouf , David F. Schaeffer , Richard Chen , Sean Michael Boyle , Jonathan M. Loree
Background: Detection of molecular residual disease (MRD) with ctDNA is highly prognostic for recurrence in CRC. However, many cancers still recur without detectable ctDNA and increased lead time before clinical recurrence may create a window of opportunity to intervene. Here we apply an ultra-sensitive assay, NeXT Personal, to profile patients in the VICTORI study, a prospective cohort of patients with CRC managed with curative-intent treatment. Methods: To date, the first 33 patients with CRC have undergone panel creation. NeXT Personal was employed to construct personalized liquid biopsy panels for each patient with up to ~1,800 single nucleotide variants (SNV) identified via whole-genome sequencing. For each patient, plasma is collected before curative intervention (baseline), every 2 weeks for 2 months (MRD window), and every 3 months for up to 3 years (surveillance). VICTORI will enroll > 175 patients and include a health economics analysis. Results: Of 33 patients enrolled to date, 25 (76%) are stage I-III and 8 are stage IV treated with curative interventions. 18 colon cancers and 15 rectal cancers are included. Pre-operative baseline sensitivity was 90.6% (29/32; 1 patient excluded as pCR at the time of baseline blood draw). Of the MRD- patients at baseline, 2 had prior neoadjuvant treatment and 1 was stage 1. Preliminary results (median 7.2 month follow-up; 5 recurrences) show 80% (4/5) of recurrences are MRD+ at the 4-week landmark and 50% (2/4; 1 missing sample) were MRD+ at the 2-week landmark. In 75% (3/4) stage II-III recurrences, the first MRD+ detection was in the ultra-low range of < 100 PPM ( < 0.01% tumor fraction). MRD detection at week 4 and 8 trended towards poorer recurrence-free survival (RFS) with similar separation of patients (log rank p = 0.062 and p = 0.011, respectively). Conclusions: Preliminary results from our prospective study demonstrate strong rates of ctDNA detection at week 4 landmark analysis, potentially due to detection of very low levels of ctDNA with an ultra-sensitive MRD assay. The majority of the first detections for MRD were in the ultra-low ctDNA range, indicating the importance of high sensitivity MRD testing.
Time Point | NeXT Personal Positivity Rate % (n) | Positivity Rate Excluding Ultra-low Detections Below 100PPM % (n) | Median MRD Variant Level, All (PPM) | Median MRD Variant Level, MRD+ (PPM) |
---|---|---|---|---|
Baseline | 90.6 (29/32) | 62.5 (20/32) | 305.0 | 394.0 |
Week 2 | 22.2 (6/27) | 11.1 (3/27) | 0.55 | 58.0 |
Week 4 | 38.5 (10/26) | 15.4 (4/26) | 0.42 | 32.5 |
Week 6 | 35.7 (10/28) | 14.3 (4/28) | 0.67 | 24.4 |
Week 8 | 41.4 (12/29) | 20.7 (6/29) | 1.11 | 50.3 |
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