Does serial circulating tumor DNA (ctDNA) monitoring identify additional acquired actionable alterations in metastatic colorectal cancer (mCRC)?

Authors

Jonathan M. Loree

Jonathan M. Loree

BC Cancer Agency, Vancouver, BC, Canada

Jonathan M. Loree , Adrian Bubie , John H Strickler , Leylah Drusbosky , Scott Kopetz , Kanwal Pratap Singh Raghav

Organizations

BC Cancer Agency, Vancouver, BC, Canada, Guardant Health, Redwood City, CA, Duke University Medical Center, Durham, NC, Guardant Health, Inc., Palo Alto, CA, The University of Texas MD Anderson Cancer Center, Houston, TX, Department of Gastrointestinal Medical Oncology, The University of Texas MD Anderson Cancer Center, Houston, TX

Research Funding

Pharmaceutical/Biotech Company
Guardant Health

Background: Traditionally, biomarker ascertainment occurred once for patients (pts) with mCRC. An advantage of ctDNA is the ease of repeated assessments. However, real-world evidence about the value of serial ctDNA in revealing actionable alterations is needed. Methods: We retrospectively evaluated 3350 pts with mCRC and a Guardant360 ctDNA assay (Guardant Health) revealing ≥1 somatic alteration who underwent ≥1 subsequent Guardant360 test to compare detection of mutations (mut: single nucleotide variants (SNVs) and indels), amplifications (amps), fusions, microsatellite instability (MSI), and blood tumor mutational burden (bTMB). Variants were filtered to pt-specific levels of detection by limiting variants across assays to those above a 0.1% mutant allele frequency (MAF) threshold on the serial test with the lowest somatic MAF for that pt. Clonal muts were defined as those at ≥10% of max MAF per sample. Results: A total of 9130 assays (mean of 2.7 assays/pt) occurring a median of 165 days apart were evaluated. Among 1476 pts initially with no alteration in MAPK pathway genes (RAS and EGFR SNV or indel, BRAF V600E SNV, or ERBB2/MET amplifications), 382 (25.8%) acquired a MAPK alteration on their second test. More gains were clonal than subclonal (231:151, 60.5%:39.5%). In pts with a subsequent assay after an acquisition (N = 80), 12 (15.0%) clonal and 15 (18.8%) subclonal acquisitions disappeared in the third assay, a median of 150 days later. Among alterations with a therapy, KRAS G12C/D, BRAF V600E, and ERBB2 amps acquisitions occurred at any later assay in 84/1476 (5.7%), 29/1476 (2%), and 21/1476 (1.4%) pts without an initial MAPK alteration, respectively. Of these, 84/134 (62.6%) emerged without another concurrent MAPK alteration, 61/84 (72.6%) of which are subclonal. Of 92 fusions noted in 86 pts, 87/92 (94.5%) were subclonal and only 28/92 (30.4%) were initially present. The majority of fusions were acquired de-novo subclonal fusions (58/64, 90.6%) but 2 pre-existing subclonal fusions subsequently became clonal. Among pts evaluable for MSI, 56/3030 (1.8%) were initially MSI-H and 30 (1%) subsequently had MSI detected on a future assay. New MSI detection was more common in pts with DNA repair muts (BRCA1/BRCA2/ATM/CHEK2/MLH1/RAD51D) on an initial assay (OR 7.52, 95% CI 3.39-16.69, P < 0.0001). Among pts evaluable for bTMB, 60/1387 (4.3%) initially had bTMB≥20 muts/Mb, and 256/1327 (19.3%) subsequently rose above 20 muts/Mb on a future assay, a median of 417 days after initial assay. Rising bTMB associated with rising max somatic MAF (Spearman rho = 0.50, P < 0.0001). Pts with DNA repair muts on an initial assay were more likely to have bTMB rise to ≥20 muts/Mb (OR 2.58, 95% CI 1.81-3.68, P < 0.001). Conclusions: In this large mCRC cohort, serial ctDNA appears to be a feasible approach to identify acquired alterations with therapeutic implications.

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Abstract Details

Meeting

2023 ASCO Annual Meeting

Session Type

Poster Session

Session Title

Gastrointestinal Cancer—Colorectal and Anal

Track

Gastrointestinal Cancer—Colorectal and Anal

Sub Track

Epidemiology/Outcomes

Citation

J Clin Oncol 41, 2023 (suppl 16; abstr 3540)

DOI

10.1200/JCO.2023.41.16_suppl.3540

Abstract #

3540

Poster Bd #

240

Abstract Disclosures

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