Correlation of tumor gene expression profile and gleason score (GS) in patients (pts) with metastatic prostate cancer.

Authors

null

Nicolas Sayegh

Hunstman Cancer Institute at the University of Utah, Salt Lake City, UT

Nicolas Sayegh , Nishita Tripathi , Beverly Chigarira , Yeonjung Jo , Vinay Mathew Thomas , Roberto Nussenzveig , Kamal Kant Kant Sahu , Haoran Li , Georges Gebrael , Clara Tandar , Divyam Goel , Nityam Rathi , Benjamin L. Maughan , Umang Swami , Neeraj Agarwal

Organizations

Hunstman Cancer Institute at the University of Utah, Salt Lake City, UT, Huntsman Cancer Institute at the University of Utah, Salt Lake City, UT, University of Utah, Salt Lake City, UT, Huntsman Cancer Institute-University of Utah Health Care, Salt Lake City, UT, Cleveland Clinic Lerner College of Medicine, Cleveland, OH

Research Funding

No funding received
None.

Background: GS is the most powerful prognostic predictor in prostate adenocarcinoma. However, the underlying reasons of disease aggressiveness as a function of GS are currently unknown. Herein we sought to investigate the corresponding differences in gene expression profiles of pts with prostate adenocarcinoma with respect to GS. Methods: In this IRB approved retrospective study, eligibility criteria included histologically confirmed prostate adenocarcinoma and available RNA sequencing results from treatment naïve primary prostate tissue by a CLIA certified lab. Pts were categorized into two cohorts: low GS (GS <8) and high GS (GS ≥ 8). The DEseq2 pipeline was used to analyze differentially expressed genes between the groups. The data included the Log2 fold change, Wald-Test p-values, and Benjamini-Hochberg adjusted p-values for each differentially expressed gene. These results were subjected to Gene Set Enrichment software analysis (GSEA) in order to identify pathways enriched in each cohort. All bioinformatic analyses were undertaken using R v4.2. Results: Fifty-seven pts were eligible, of which 13 had a GS <8 and 44 had a GS ≥8. Tumor tissues with high GS had a significantly higher expression of genes involved in the immune pathways (e.g., inflammatory response, interferon-γ, allograft rejection, and interferon-α), epithelial-mesenchymal transition, KRAS signaling, E2F targets and G2M checkpoint (q for all <0.01). The genes involved in the androgen response pathway were significantly more expressed in biopsies with a low GS (q<0.01). Normalized enrichment scores are reported in the table. Differential individual gene expression profiles will be presented at the meeting. Conclusions: Pts with prostatic adenocarcinoma with a GS ≥8 demonstrated a different transcriptomic profile than those with a GS <8. Higher GS tumor tissues had upregulated of inflammatory, proliferation, and KRAS signaling. Lower GS tumor tissues had upregulated androgen signaling pathway. These hypothesis-generating results upon external validation may provide the rationale for personalized therapy in men with prostatic cancer.

Tumor GSEA in low versus high GS prostatic adenocarcinoma.

Selected PathwayNormalized Enrichment Score (NES)*q-values
Androgen response+1.82<0.01
E2F targets-1.68<0.01
TNFA signaling via NFKB-1.71<0.01
Complement-1.72<0.01
Interferon-α response-1.98<0.01
KRAS signaling-1.91<0.01
Epithelial-mesenchymal transition-2.01<0.01
Allograft rejection-2.07<0.01
Interferon-γ response-2.08<0.01
Inflammatory response-2.16<0.01

*Negative NES = downregulation in low GS pts, Positive NES= upregulation in low GS pts.

Disclaimer

This material on this page is ©2024 American Society of Clinical Oncology, all rights reserved. Licensing available upon request. For more information, please contact licensing@asco.org

Abstract Details

Meeting

2023 ASCO Genitourinary Cancers Symposium

Session Type

Poster Session

Session Title

Poster Session A: Prostate Cancer

Track

Prostate Cancer - Advanced,Prostate Cancer - Localized

Sub Track

Translational Research, Tumor Biology, Biomarkers, and Pathology

Citation

J Clin Oncol 41, 2023 (suppl 6; abstr 235)

DOI

10.1200/JCO.2023.41.6_suppl.235

Abstract #

235

Poster Bd #

H19

Abstract Disclosures

Similar Abstracts