Prevalence of incidental pathogenic germline variants detected in cfDNA in patients with oncogene-driven non-small cell lung cancer.

Authors

null

Laura Mezquita

Hospital Clinic-DIBAPS, Barcelona, Spain

Laura Mezquita , Leslie A. Bucheit , Juan Carlos Laguna , Belen Pastor , Cristina Teixido , Teresa Gorria , Victor Albarran-Artahona , Marta Garcia de Herreros , Roxana Reyes , Noemi Reguart , Nuria Vinolas , Ainara Arcocha , Joan Anton Puig-Butillé , Leylah Drusbosky , Iris Faull , Elena Castro , Jyoti D. Patel , Aleix Prat , Benjamin Besse

Organizations

Hospital Clinic-DIBAPS, Barcelona, Spain, Guardant Health, Redwood City, CA, Hospital Clinic Barcelona, Barcelona, Spain, Hospital Clinic, Barcelona, Spain, Hospital Clinic of Barcelona, Barcelona, Spain, Hospital Clínic de Barcelona, Barcelona, Spain, Medical Oncology, Hospital Clínic Barcelona, Barcelona, Spain, Guardant Health, Inc., Redwood City, CA, Hospitales Virgen de la Victoria y Regional de Málaga, Instituto de Investigación Biomédica de Málaga, Málaga, Spain, Northwestern University-Feinberg School of Medicine, Chicago, IL, Medical Oncology Department, Hospital Clínic, Barcelona, Spain, Barcelona, Spain, Cancer Medicine Department, Gustave Roussy, Villejuif, France

Research Funding

No funding received

Background: Preliminary data has highlighted inherited predisposition to lung cancer (LC) related to certain pathogenic germline variant (PGV) in cancer predisposing genes, including patients (pts) with tumors harboring somatic driver oncogene alterations (alt); however, the frequency of PGV in LC is unknown. Liquid biopsy assays may be able to identify incidental PGV (iPGV) in pts with solid tumors at scale. Here, we report the prevalence of iPGV in genes predisposing to cancer in pts with advanced non-small cell LC (aNSCLC) relative to driver alt status. Methods: Genomic results were retrospectively queried from 31126 pts with aNSCLC who had Guardant360 testing as part of routine clinical care from 10/2020-12/2021. iPGVs were defined as being non-synonymous, non-VUS alt in selected genes known to increase lifetime cancer risk (Table) with variant allele frequency (VAF) >30% and pathogenicity defined by a proprietary bioinformatics pipeline. Clinical factors such as age, gender, histology, and diagnosis status (new/progressing) were extracted from test requisition forms. The driver group included guideline-recommended and emerging somatic mutations (m) in EGFR/KRAS/BRAF/MET/HER2, fusions (f) in ALK/ROS1/RET/NTRK1-3 and amplifications (a) in HER2/MET. Results: Out of 31126, 720 (2.3%) of pts had predicted iPGV, of whom 54% were female, with a median age of 64 (22-100); most pts were newly diagnosed (66%). Among them, 92% of pts had iPGVs identified in the homologous recombination and repair (HRR) pathway, 3% in mismatch repair (MMR) pathway and 5% EGFR iPGVs. A total of 335 (47%) pts with iPGVs had somatic driver alt (Table): 20% of pts with iPGV had KRASm (n=144/720; 67 G12C), 12% EGFRm (n=87; 28 ex19del, 35 ex21(L858R)), 2.5% BRAFm (n=18), 2.5% METm ex14 skip (n=18), 0.1% HER2m (n=1), 0.8% ALKf (n=6), 0.1% ROS1f (n=1), 0.1% RETf (n=1), 0.1% HER2a (n=1), and 0.4% METa (n=3). ATM iPGVs were enriched in pts with driver alt. (45% driver vs 27% non-driver, p<0.0001) while BRCA1 iPGVs were more frequently observed in pts without driver alt. (17% vs 8%, p<0.0001). Distribution of other iPGVs was similar across driver/non-driver groups. Conclusions: In this large cohort, 2.3% of pts with aNSCLC were iPGV-carriers; 47% of pts had oncogene-driven tumors, particularly with KRAS, EGFR, BRAF and MET alt. iPGV and lung carcinogenesis need further evaluation to define the role of genetic predisposition in LC risk and to determine the highest risk individuals to explore screening and therapeutic strategies, such as in pts with other solid tumors.

Landscape/prevalence of driver alt in pts with aNSCLC and iPGV.


Total
KRASm
(N=144)
EGFRm
(N=87)
Fusions

(N=9)
METex14
(N=18)
METa

(N=3)
BRAFm

(N=18)
ERBB2 m/a (N=3)
ATM
126
84
28
2 ALK

1 ROS1
1

7
3
BRCA1
25
13
7
1 ALK
1

3

BRCA2
76
23
31
1 RET
14
2
5

CHEK2
6
4


1

1

FANCA
14
8
2
2 ALK
1
1


PALB2
6
4

1 ALK


1

RAD51D
1
1






MLH1 MSH6 PMS2
1

5

1


5

1




1

EGFR
18

18





Disclaimer

This material on this page is ©2024 American Society of Clinical Oncology, all rights reserved. Licensing available upon request. For more information, please contact licensing@asco.org

Abstract Details

Meeting

2022 ASCO Annual Meeting

Session Type

Poster Session

Session Title

Prevention, Risk Reduction, and Hereditary Cancer

Track

Prevention, Risk Reduction, and Genetics

Sub Track

Etiology/Epidemiology

Citation

J Clin Oncol 40, 2022 (suppl 16; abstr 10569)

DOI

10.1200/JCO.2022.40.16_suppl.10569

Abstract #

10569

Poster Bd #

445

Abstract Disclosures

Similar Abstracts

Abstract

2023 ASCO Gastrointestinal Cancers Symposium

Circulating tumor DNA–based genomic landscape of KRAS wild-type pancreatic adenocarcinoma.

First Author: Brendon Fusco

Abstract

2023 ASCO Annual Meeting

The clinical and genomic characteristics of KRAS G12D mutated cancers.

First Author: Guomin Lin

First Author: Arunthi Thiagalingam