A targeted gene expression biomarker and association with meningioma outcomes and radiotherapy.

Authors

null

William Cheng Chen

UCSF Department of Radiation Oncology, San Francisco, CA

William Cheng Chen , Abrar Choudhury , Harish Vasudevan , Calixto-Hope C. Lucas , Minh P. Nguyen , Jacob S Young , Theresa Yu , Jason Chan , Nancy Ann Oberheim Bush , Jessica Schulte , Javier Villanueva-Meyer , Steve E. Braunstein , Nicholas A. Butowski , Penny Sneed , Mitchell Berger , Arie Perry , David Solomon , Michael W McDermott , Stephen T. Magill , David R. Raleigh

Organizations

UCSF Department of Radiation Oncology, San Francisco, CA, University of California-San Francisco, San Francisco, CA, UCSF, San Francisco, CA, Department of Neurosurgery & Division of Neuro-Oncology, University of San Francisco, San Francisco, CA, University of Maryland, Baltimore, MD, University of California San Francisco, San Francisco, CA, Columbia University Irving Medical Center, New York, NY, University of California, Department of Neurological Surgery, San Francisco, CA, Miami Neuroscience Institute Baptist Health South Florida, Miami, FL, Northwestern University, Chicago, IL

Research Funding

Other Foundation

Background: Improvements in risk stratification of meningioma are needed to guide post-operative management and application of adjuvant therapy. Although profiling of DNA methylation, copy number variants (CNVs), RNA sequencing, and exome sequencing have better elucidated meningioma biology, these approaches have not revealed clinically tractable biomarkers for radiotherapy responses. In this study, we develop and validate a targeted gene expression biomarker to predict meningioma outcomes and benefit from radiotherapy. Methods: Targeted gene expression profiling was performed on a development set of 173 meningiomas (median follow-up 8.1 years) and a validation set of 331 consecutive meningiomas (median follow-up 6.1 years) treated at independent institutions (70% WHO grade 1, 24% WHO grade 2, 6% WHO grade 3). All patients underwent surgery (n = 504) with or without postoperative radiotherapy (n = 73 with radiation). Regularized Cox regression within the development set resulted in a continuous gene expression risk score for local freedom from recurrence (LFFR). The model (34 genes and 7 housekeeping genes) and thresholds for low, intermediate, and high-risk scores were locked and applied to the validation set. Results: The gene expression risk score outperformed WHO grade (validation 5-year LFFR delta-AUC 0.15, 95% CI 0.076-0.229, p = 0.001) and DNA methylation grouping (delta-AUC 0.075, 95% CI 0.006-0.130, p = 0.01) for LFFR, disease-specific survival, and OS, achieving a negative predictive value for recurrence at 5-years of 93.2%. The biomarker reclassified 35.8% of WHO grade 1 tumors as intermediate or high risk (5-year LFFR/OS 62%/79%), and 18.3% of WHO grade 2-3 tumors as low risk (5-year LFFR/OS 78%/100%). The biomarker was independently prognostic after accounting for WHO grade, extent of resection, primary versus recurrent presentation, CNV status, DNA methylation group, and Ki67 labeling index, and was predictive for LFFR after postoperative radiotherapy, with a hazard ratio of 0.41 for intermediate to high risk propensity-matched meningiomas (95% CI 0.2-0.9, p = 0.0002) versus 0.79 for low risk meningiomas (95% CI 0.1-8.8, p = 0.5182). Conclusions: Targeted gene expression profiling of 504 meningiomas resulted in a biomarker which improved discrimination of meningioma local recurrence, disease-specific survival, and overall survival, and also predicted benefit from radiotherapy.

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Abstract Details

Meeting

2022 ASCO Annual Meeting

Session Type

Oral Abstract Session

Session Title

Central Nervous System Tumors

Track

Central Nervous System Tumors

Sub Track

Primary CNS Tumors–Non-Glioma

Citation

J Clin Oncol 40, 2022 (suppl 16; abstr 2007)

DOI

10.1200/JCO.2022.40.16_suppl.2007

Abstract #

2007

Abstract Disclosures

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