Correlative results from NCI protocol 10250: A phase II study of temozolomide and olaparib for the treatment of advanced uterine leiomyosarcoma.

Authors

Sminu Bose

Sminu Bose

Columbia University Irving Medical Center, New York, NY

Sminu Bose , Matthew Ingham , Li Chen , Bose Kochupurakkal , Adrian Marino-Enriquez , Jacob B. Allred , Suzanne George , Steven Attia , Melissa Amber Burgess , Mahesh Seetharam , Sosipatros Alexandros Boikos , Nam Bui , James Lin Chen , Julia Lee Close , Gregory Michael Cote , S. Percy Ivy , Biswajit Das , Geoffrey Shapiro , Gary K. Schwartz

Organizations

Columbia University Irving Medical Center, New York, NY, Molecular Characterization Laboratory, Frederick National Laboratory for Cancer Research, Frederick, MD, Dana-Farber Cancer Institute, Boston, MA, Brigham and Women's Hospital, Harvard Medical School, Boston, MA, Mayo Clinic, Rochester, MN, Mayo Clinic, Jacksonville, FL, University of Pittsburgh School of Medicine Hillman Cancer Center, Pittsburgh, PA, Mayo Clinic Arizona, Scottsdale, AZ, Virginia Commonwealth University Hospital, Richmond, VA, Stanford University, Stanford, CA, The Ohio State University, Columbus, OH, University of Florida/UF Health Cancer Center, Gainesville, FL, Massachusetts General Hospital, Boston, MA, National Cancer Institute, Rockville, MD

Research Funding

Conquer Cancer Foundation of the American Society of Clinical Oncology

Background: uLMS is an aggressive sarcoma subtype of smooth muscle origin. Chemotherapy provides limited benefit for advanced disease. 18-25% of uLMS harbor deleterious alterations in homologous recombination (HR) DNA repair genes. uLMS exhibits high levels of replicative stress. These findings prompted a phase 2 study of O+T in pretreated uLMS where O+T demonstrated activity: ORR 27%, mPFS 6.9 mos (Ingham M. et. al. ASCO 2021: #11506) Methods: NCI protocol #10250 is a single-arm, multicenter, phase 2 trial evaluating O+T in advanced uLMS pts with progression on ≥1 prior line. Pre-treatment (Pre) and on-treatment (On) biopsies were collected from 22 pts. In prespecified analysis, we evaluated for a relationship between clinical outcomes and HR gene alterations by whole exome sequencing (WES), SLFN11/MGMT expression by RNAseq, and RAD51 foci formation (functional assay). HRD scores were calculated from WES using scarHRD. Gene expression was evaluated using a Spearman rank-order correlation analysis to identify genes associated with PFS (p < 0.01) and overexpressed in sensitive (S: PFS > 240d) or resistant (R: PFS < 240d) pts. Gene set enrichment analysis (GSEA) was performed (q = FDR-adjusted p value). Pts with available results: WES/RNAseq (16), Pre HRD score (13), Pre RAD51 foci (12). Results: 31% (5/16) pts had a mutation (Mut) or homozygous deletion (Hd) in the HR panel: ATRX Mut (2), ATR Mut, PALB2 Hd, RAD51B Hd. Pts with PALB2 and RAD51B Hd had longest PFS on study. Recurrent alterations also occurred in TP53 (56%) and RB1 (19%). Median HRD score in Pre samples was 51 (range 36-66) and 10/13 had HRD scores ≥ 42. Pre and On SLFN11 and MGMT RNA expression were not correlated with ORR/PFS. 6/13 Pre samples were HR-deficient by the RAD51 foci assay. Of pts with PFS ≥ 200d, 4/6 were HR-deficient. In Pre samples, 81 genes were overexpressed in S pts and 73 in R pts. In On samples, 146 genes were overexpressed in S pts and 127 in R pts. In On samples, GSEA identified the epithelial-mesenchymal transition enriched in S pts (q = 3.38e-7) and cell cycle pathways (E2F targets, G2M checkpoint) in R pts (q = 7.43e-4). Only 2 genes, CXCL10 and PCDH15, were differentially expressed between paired Pre and On samples (both increased in On). Gene expression signatures for replicative stress showed borderline association with worse PFS. Conclusions: Most uLMS tumors exhibit HR defects as measured by HRD scores. A subset of pts with greater benefit from O+T were identified by WES for HR genes and the RAD51 assay. There was no correlation between SLFN11 and MGMT expression and outcomes. GSEA identified pathways differentially expressed in S and R pts in On samples. O+T induced CXCL10 which has been associated with T-cell trafficking to tumors. A randomized phase 3 trial of O+T versus investigator’s choice is planned. These results provide insight into which pts may benefit most from this novel drug combination. Clinical trial information: NCT03880019.

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Abstract Details

Meeting

2022 ASCO Annual Meeting

Session Type

Clinical Science Symposium

Session Title

Biomarkers Beyond Histology in Contemporary Sarcoma Clinical Trials

Track

Sarcoma

Sub Track

Soft Tissue Tumors

Clinical Trial Registration Number

NCT03880019

Citation

J Clin Oncol 40, 2022 (suppl 16; abstr 11509)

DOI

10.1200/JCO.2022.40.16_suppl.11509

Abstract #

11509

Abstract Disclosures

Funded by Conquer Cancer

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