Huntsman Cancer Institute - University of Utah Health Care, Salt Lake City, UT
Nicolas Sayegh , Umang Swami , Pedro C. Barata , Michael B. Lilly , Roberto Nussenzveig , Chuck Hensel , Alan Haruo Bryce , Mehmet Asim Bilen , Elisabeth I. Heath , Lakshminarayanan Nandagopal , Rohan Garje , Philip James Saylor , Hani M. Babiker , Daniel A. Vaena , Manish Kohli , Sumanta K. Pal , A. Oliver Sartor , Neeraj Agarwal
Background: PARP inhibitors, olaparib and rucaparib recently improved survival outcomes (in the Profound and Triton-2 trials) in pts with aPC harboring HRRm. Notably, ~35% of pts screened for the PROfound trial did not meet eligibility solely due to the lack of adequate quality/quantity of tumor tissue required for CGP (De Bono, NEJM, 2020). cfDNA analysis non-invasively assesses tumor-derived genomic alterations. We evaluated the prevalence of HRRm in a real-world aPC population, who had commercially available cfDNA assay results available. Methods: cfDNA based CGP (using a clinically-validated 73- to 74-gene panel i.e. Guardant360 or G360) from consecutive aPC pts between 11/2016–8/2020 were used for detection of HRRm. Frameshift and nonsense mutations were included as pathogenic. Variants of unknown significance were excluded. In this unmatched study, the prevalence of each HRRm was compared with those reported in literature using the chi square test. Results: cfDNA CGP from 7701 aPC pts were available for interrogation of BRCA1/BRCA2 mutations, & from 4671 aPC pts for ATM mutations. Prevalence of BRCA1 and 2 as detected by cfDNA was similar to historical CGP of primary tissue. Prevalence of BRCA1 was higher than historical CGP of metastatic tissue. Prevalence of ATM in cfDNA was higher than historic tumor tissue CGP but similar to prior reports from cfDNA testing (Table). Conclusions: In this large real-world population of pts with aPC undergoing routine cfDNA CGP by a CLIA certified lab, prevalence of HRRm was similar (or higher for BRCA1 and ATM) to what has been previously reported from the tumor tissue. These data provide the rationale for utilizing cfDNA CGP as a routine test for detection of HRRm in men with aPC to identify men who are candidates for PARPi.
Gene | Study | Sample | Prevalence (%) | 95% Confidence Interval | Pt num | p-value |
---|---|---|---|---|---|---|
BRCA1 | Sayegh | cfDNA | 4.06 | [3.62-4.50] | 7707 | N/A |
BRCA1 | Chung | metastatic tissue | 1.32 | [0.80-2.12] | 1816 | <0.001 |
BRCA1 | Mateo | primary tissue | 1.71 | [0.00-3.64] | 175 | 0.118 |
BRCA2 | Sayegh | cfDNA | 7.97 | [7.36-8.57] | 7707 | N/A |
BRCA2 | Chung | metastatic tissue | 10.90 | [9.47-12.33] | 1816 | <0.001 |
BRCA2 | Mateo | primary tissue | 8 | [3.98-12.02] | 175 | 0.987 |
BRCA2 | Kohli | cfDNA | 8 | [4.64-11.36] | 250 | 0.985 |
ATM | Sayegh | cfDNA | 19.87 | [18.72-21.01] | 4671 | N/A |
ATM | Kohli | cfDNA | 15 | [10.57-19.43] | 250 | 0.059 |
PMID: Chung et al - 31218271, Mateo et al - 31874108, Kohli et al - 32268276
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