Plasma circulating tumor DNA-based genetic profiling of lung cancer patients in Vietnam using ultra-deep massive parallel sequencing with unique identifier tagging.

Authors

Huy Do

Huy Phuoc Do

Gene Solutions, Vietnam, Medical Genetics Institute, Ho Chi Minh, Viet Nam

Huy Phuoc Do , Thao Thanh Tran Nguyen , Uyen Vu Tran , Thanh-Truong Tran , Anh-Thu Huynh Dang , Vu Trieu Nguyen , Chu Van Nguyen , Han Ngoc Do , Minh-Duy Phan , Le Son Tran , Hoai-Nghia Nguyen , Hoa Giang

Organizations

Gene Solutions, Vietnam, Medical Genetics Institute, Ho Chi Minh, Viet Nam, Gene Solutions, Vietnam, Medical Genetics Institute, Ho Chi Minh City, Vietnam, Graduate Program of Genetics, Ho Chi Minh City University of Science, Ho Chi Minh, Viet Nam, University of Medicine and Pharmacy at Ho Chi Minh City, Ho Chi Minh, Viet Nam, Thu Duc Hospital, Ho Chi Minh City, Vietnam, National K Cancer Hospital, Ha Noi, Viet Nam, Gene Solutions, Vietnam, Ho Chi Minh, Viet Nam, Medical Genetics Institute, Ho Chi Minh City, Viet Nam, Gene Solutions, Vietnam, University of Medicine and Pharmacy at Ho Chi Minh City, Ho Chi Minh, Viet Nam, Gene Solutions, Vietnam; Medical Genetics Institute, Ho Chi Minh City, Vietnam, Ho Chi Minh, Viet Nam

Research Funding

Pharmaceutical/Biotech Company
Vietnam Nationnal Foudation for Science and Technology Development (NAFOSTED), Ho Chi Minh City Department of Science, Gene Solutions.

Background: Lung cancer is by far the leading cause of cancer death worldwide, with non-small cell lung cancer (NSCLC) accounting for the majority of cases. Genotype-directed therapy becomes a promising method for cancer treatment beside surgery and chemo-radiotherapy. Liquid biopsy using massive parallel sequencing has emerged as a non-invasive alternative procedure in profiling cancer driver mutations. In this study, we report the spectrum of clinically actionable mutations in plasma circulating tumor DNA of 299 non-small cell lung cancer patients using ultra-deep massive parallel sequencing with unique identifier tagging. Methods: Plasma circulating tumor DNA was extracted, ligated with unique identifier (Swift Bioscience), enriched of the target coding regions of EGFR, KRAS, NRAS, BRAF and the breakpoints of ALK, ROS1 (IDT) and sequenced using NextSeq 550 (Illumina) at mean coverage depth of 20,000X. Results: Out of 299 patients tested, 128 (42,8%) carried driver mutations. Genetic alterations were identified in EGFR (79 samples, 26,4%), KRAS (30 samples, 10%), ALK (7 samples, 2,34%), ROS1 (6 samples, 2%), BRAF (3 samples, 1%). There was no sample with NRAS mutation. In 79 EGFR-cases, there were 23 carry two pathogenic variants. 28 mutation types of EGFR were found including 19 indels and 9 missense variants L858R and T790M were the major ones. One case was found with concomitant EGFR and BRAF. Our study showed the spectrum and frequency of the cancer driver mutations detected in liquid biopsy was correlated to those detected in tissue biopsy samples. Conclusions: For the first time the spectrum of mutation types in liquid biopsy of Vietnamese NSCLC patients were investigated and showed the correlation with those detected in tissue biopsy samples.

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Abstract Details

Meeting

2019 Breakthrough

Session Type

Poster Session

Session Title

Poster Session A: Access to Care, Diagnostics, Early Detection and Diagnosis, Prevention and Screening, and Surveillance

Track

Access to Care,Diagnostics,Early Detection and Diagnosis,Prevention and Screening,Surveillance

Sub Track

Early Detection and Diagnosis

Citation

J Glob Oncol 5, 2019 (suppl 1; abstr 58)

DOI

10.1200/JGO.2019.5.suppl.58

Abstract #

58

Poster Bd #

D12

Abstract Disclosures

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