Association of PIK3CA mutations (mut) with immune engagement and clinical benefit from immunotherapy in microsatellite stable (MSS) colorectal cancer (CRC) patients (pts).

Authors

Maliha Nusrat

Maliha Nusrat

Department of Investigational Cancer Therapeutics, The University of Texas MD Anderson Cancer Center, Houston, TX

Maliha Nusrat , Jason Roszik , Riham Katkhuda , David Menter , Kanwal Pratap Singh Raghav , Van K. Morris II, Padmanee Sharma , James Patrick Allison , Jorge M. Blando , Dipen M. Maru , Gregory Lizee , Filip Janku , Michael J. Overman , Scott Kopetz

Organizations

Department of Investigational Cancer Therapeutics, The University of Texas MD Anderson Cancer Center, Houston, TX, Department of Melanoma Medical Oncology, The University of Texas MD Anderson Cancer Center, Houston, TX, Department of Translational Molecular Pathology, The University of Texas MD Anderson Cancer Center, Houston, TX, Department of Gastrointestinal Medical Oncology, The University of Texas MD Anderson Cancer Center, Houston, TX, The University of Texas MD Anderson Cancer Center, Houston, TX, Department of Immunology, The University of Texas MD Anderson Cancer Center, Houston, TX, Department of Pathology Administration, The University of Texas MD Anderson Cancer Center, Houston, TX

Research Funding

Other

Background: PI3K pathway alterations, PIK3CA mut or PTEN loss, are known to modulate anti-tumor immune microenvironment. MSS CRC pts respond infrequently to immunotherapy, suggesting the presence of a rare MSS immunogenic subset. We investigated the immune repertoire and outcomes on immunotherapy trials in PIK3CA mut MSS CRC pts. Methods: Immune infiltrates and checkpoints were evaluated using quantitative immuno-histochemistry (IHC) on primary CRC. Mutations were assessed by next generation sequencing. PIK3CA mut neoepitopes and HLA allele affinities were predicted using NetMHC 4.0 Server. Outcomes of MSS CRC pts enrolled in 7 immunotherapy trials were assessed. Clinical benefit (CB) was defined as CR, PR or SD of 24 weeks. Time to progression (TTP) was calculated using Kaplan-Meier Method. PIK3CA mut vs wild type (wt) groups were compared using Mann-Whitney U, Fisher’s exact, or Log-Rank tests as appropriate. Results: PI3K alterations were present in 14/40 MSS CRC pts in IHC cohort (7 PIK3CA mut, 33 wt; 7 PTEN loss, 33 intact). The center of PIK3CA mut MSS CRC had higher median densities of CD3+ cells [1112 (IQ range 865-1421) vs 435 (300-744) cells/mm3; P=0.037] and CD8+ cells [554 (331-1200) vs 185 (60-473) cells/mm3; P=0.037] as compared to PIK3CA wt tumors. Intratumoral immune infiltrates did not differ by PTEN IHC staining in MSS CRC. PD-L1 H-scores were also higher in PIK3CA mut MSS CRC [85 (34-114) vs 29 (11-60); P=0.01]. Several activating PIK3CA mut (E542K, E545K, H1047R) were predicted to generate true neoepitopes with high binding affinity to common HLA types. Indeed, among MSS CRC pts enrolled in 7 immunotherapy trials, half (4/8) of PIK3CA mut pts derived CB as compared to 3/35 (8.6%) PIK3CA wt pts (P=0.015). PIK3CA mut pts had trend towards longer TTP (3.8 months in mut vs 2.1 months in wt; P=0.08). CB or TTP did not differ by colon sidedness, monotherapy / combination therapy, number of mut, or mut in other key genes (APC, SMAD4, TP53, KRAS, NRAS or BRAF). Conclusions:PIK3CA mut MSS CRC are associated with increased cytotoxic T cell infiltration, higher PD-L1 expression, and greater clinical benefit from immunotherapy. Further investigation of immunotherapy outcomes in the context of neoepitope-HLA allele interaction may help identify a subset of PIK3CA mut MSS CRC pts who are likely to benefit from immunotherapy.

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Abstract Details

Meeting

2019 ASCO Annual Meeting

Session Type

Poster Session

Session Title

Gastrointestinal (Colorectal) Cancer

Track

Gastrointestinal Cancer—Colorectal and Anal

Sub Track

Epidemiology/Outcomes

Citation

J Clin Oncol 37, 2019 (suppl; abstr 3604)

DOI

10.1200/JCO.2019.37.15_suppl.3604

Abstract #

3604

Poster Bd #

96

Abstract Disclosures

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