Genomic landscape of de novo stage IV breast cancer.

Authors

null

Ana Christina Garrido-Castro

Dana-Farber Cancer Institute, Boston, MA

Ana Christina Garrido-Castro , Liam Spurr , Melissa E Hughes , Yvonne Y. Li , Andrew D. Cherniack , Brittany L. Bychkovsky , Romualdo Barroso-Sousa , Simona Di Lascio , Janet Files , Priti Kumari , Ethan Cerami , Ian E. Krop , Laura E MacConaill , Neal Ian Lindeman , Barrett J Rollins , Bruce E. Johnson , Nikhil Wagle , Eric P. Winer , Deborah Dillon , Nancy U. Lin

Organizations

Dana-Farber Cancer Institute, Boston, MA, Department of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA, Hospital Sírio-Libanês, Brasília, Brazil, Oncological Institute Of Southern Switzerland, Bellinzona, Switzerland, Center for Cancer Genome Discovery, Dana-Farber Cancer Institute, Boston, MA, Brigham and Women's Hospital, Boston, MA

Research Funding

Other Foundation
Other Foundation, U.S. National Institutes of Health

Background: Genomic profiling of primary and recurrent metastatic breast cancer (rMBC) has revealed potential resistance mechanisms to therapy. In contrast, de novo stage IV breast cancer (DNIV) represents an opportunity to elucidate metastatic drivers in the absence of treatment selection. Methods: Targeted NGS (Oncopanel, OP) using multiplexed copy number variation (CNV) and mutation (mut) detection across the full coding regions of 300 genes and selected intronic regions of 35 genes was performed on either primary or metastatic samples collected in patients (pts) with DNIV or rMBC. Mut/CNV in primary and metastatic tumors were compared per subtype between DNIV and rMBC using Fisher´s exact test (significant p<0.05). FDR were computed (q<0.25). Results: Between 8/2013-9/2016, of 929 pts who underwent OP testing 212 presented with DNIV; 136 HR+/HER2- (64%); 35 HR+/HER2+ (17%); 25 TNBC (12%); 16 HR-/HER2+ (8%). In 168 (79%) pts, the primary was tested; 44 had a metastatic site tested. Comparison of primary HR+/HER2- tumors showed that DNIV pts were more likely to harbor mut in CDKN1B, SETD2 and PMS2 and less likely to have TP53 mut than rMBC (Table). Metastases in HR+/HER2- DNIV (n=29) had higher mut in CDH1, PTCH1 and CTNNB1 and fewer CCND1 amplification (amp) than rMBC (n=121), albeit these findings lost significance after FDR correction. DNIV primary TNBC (n=19) was significantly enriched for CIITA mut (26% vs. 0%; q=0.046) and MYB amp (21% vs. 0%, q=0.098) compared to rMBC (n=101). TP53 mut, amp in RAD21, MYC, MYB, PTK2 and EGFR, and deletions in CDKN2A/2B and MAP2K4 significantly predicted poorer overall survival in DNIV. Conclusions: DNIV primary and metastatic tumors have distinct genomic profiles compared to rMBC. Alterations in genes involved in epigenetic modulation (KMT2D, SETD2) and epithelial-mesenchymal transition (CDH1,PTCH1, CTNNB1) are more prevalent in HR+/HER2- DNIV. DNIV TNBC is enriched for CIITA mut, described to promote immune escape via reduced MHC class II expression. If validated, these findings may provide insight into mechanisms underlying metastatic potential.

Primary HR+/HER 2- tumors
rMBC (N=232)
DNIV (N=86)
MUTN%N%p value
SETD231.389.30.001
CDKN1B41.767.00.027
PMS220.944.70.048
KMT2D135.61112.80.052
TP537632.81820.90.052

Disclaimer

This material on this page is ©2024 American Society of Clinical Oncology, all rights reserved. Licensing available upon request. For more information, please contact licensing@asco.org

Abstract Details

Meeting

2019 ASCO Annual Meeting

Session Type

Poster Discussion Session

Session Title

Breast Cancer—Metastatic

Track

Breast Cancer

Sub Track

Other Breast Cancer Subtypes

Citation

J Clin Oncol 37, 2019 (suppl; abstr 1022)

DOI

10.1200/JCO.2019.37.15_suppl.1022

Abstract #

1022

Poster Bd #

103

Abstract Disclosures