Creation and characterization of a novel human PDGFRA D842V-mutant GIST cell line.

Authors

null

Lillian Rose Klug

Portland VA Health Care System and OHSU Knight Cancer Institute, Portland, OR

Lillian Rose Klug , Gleb Abalakov , Diana Griffith , Ajia Town , Arin McKinley , Susanne Grunewald , Sebastian Bauer , Lori Rink , Michael C. Heinrich

Organizations

Portland VA Health Care System and OHSU Knight Cancer Institute, Portland, OR, Fox Chase Cancer Center, Philadelphia, PA, Portland VA Medical Center and Oregon Health and Science University Knight Cancer Institute, Portland, OR, West German Cancer Center, University Hospital, Essen, Germany, West German Cancer Center, University Hospital Essen, Essen, Germany, Portland VA Health Care System and Knight Cancer Institute, Oregon Health & Science University, Portland, OR

Research Funding

Other Foundation

Background: Activating PDGFRA mutations are seen in about 10% of gastrointestinal stromal tumors (GIST). Of these, the majority are one specific PDGFRA mutation, D842V, which confers resistance to all clinically approved tyrosine kinase inhibitors (TKI). Much has been learned about the mechanism by which TKIs work in GIST using cell lines derived from human GIST that bear activating KIT mutations. However, despite enormous effort to develop cell lines derived from human tumors over the past 15 years, there are currently no human cell models of PDGFRA D842V GIST. With the development of potent PDGFRA D842V TKI, such as crenolanib, avapritinib, and DCC2618 it is of interest to understand how these drugs affect PDGFRA-mutant GIST biology. Methods: We sought to convert the KIT-driven GIST-T1 cell line to be PDGFRA-driven by transduction with PDGFRA D842V. Endogenous KIT expression was knocked-out using CRISPR Cas9. Knockout was verified at protein and DNA levels. Clonal KIT knockout cell lines were tested for sensitivity to KIT and PDGFRA TKI both in vitro and in vivo models. Kinase dependence was determined by measuring the effect on viability after KIT and/or PDGFRA knockdown by siRNA. Results: GIST-T1 cells transduced with PDGFRA D842V display highly phosphorylated PDGFRA, imatinib resistance, and PDGFRA dependence. Cell lines that express both endogenous mutant KIT and exogenous PDGFRA D842V maintain some dependence on KIT, but less so than the parental KIT-driven GIST-T1 cell line. Complete knockout of KIT protein expression was achieved in GIST-T1 D842V cells using CRISPR-Cas9. GIST-T1 D842V KITko cell lines demonstrate sensitivity to TKI avapritinib, crenolanib, and DCC2618. Xenografts were established using GIST-T1 D842V KITko cell lines and are sensitive to avapritinib in vivo. Conclusions: The GIST-T1 D842V KITko cell line demonstrates ability to switch kinase allegiance resulting in PDGFRA-dependence and KIT-independence. This GIST-T1 D842V KITko cell line represents a novel model of PDGFRA-mutant GIST and can be used to understand the unique biological aspects of these tumors, particularly the response to new potent PDGFRA kinase inhibitors such as avapritinib which will have immense clinical relevance.

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Abstract Details

Meeting

2019 ASCO Annual Meeting

Session Type

Publication Only

Session Title

Sarcoma: Publication Only

Track

Sarcoma

Sub Track

Gastrointestinal Stromal Tumors (GIST)

Citation

J Clin Oncol 37, 2019 (suppl; abstr e22512)

DOI

10.1200/JCO.2019.37.15_suppl.e22512

Abstract #

e22512

Abstract Disclosures