Pan-cancer mesenchymal assay to predict response to MEK inhibitors.

Authors

null

Nuala McCabe

Almac Diagnostics, Craigavon, United Kingdom

Nuala McCabe , Laura A Knight , Lara Dura Perez , Bethanie Price , Andrena McCavigan , Aya El-Helali , Sharon Eddie , Charlie Gourley , Denis P Harkin , Richard D. Kennedy

Organizations

Almac Diagnostics, Craigavon, United Kingdom, Centre for Cancer Research and Cell Biology, Queen's University Belfast, Belfast, United Kingdom, Queens University Belfast, Belfast, United Kingdom, University of Edinburgh Cancer Research UK Centre, MRC IGMM, Edinburgh, United Kingdom

Research Funding

Other

Background: Unsupervised hierarchical clustering of gene expression data from 265 high grade serous ovarian cancer (HGSOC) patients identified 3 major molecular subgroups. One subgroup is driven by activation of the MAPK-pathway and is associated with a mesenchymal phenotype, poor prognosis and resistance to platinum.The MAPK pathway is currently being targeted by novel therapeutics and hence an assay to detect activation of the pathway across cancers would be highly valuable as a clinical trial enrichment tool. Methods: Using TCGA data we show the existence of the mesenchymal subgroup across a range of solid tumours including stomach, bladder colon, lung, melanoma and prostate cancer. Further to this, a common gene list was generated to include only transcripts with high variability and expression across diseases, and used as a starting list for the development of a 15 transcript assay which can be used to prospectively identify the mesenchymal subgroup from archived tissue. The 15 gene expression assay was tested in preclinical model systems to assess its utility at predicting response to MEK inhibitors. Results: The 15 gene expression mesenchymal assay was a poor prognostic marker in 13 different solid tumours: overall HR = 1.78 [95% CI:1.65-1.92]) p < 0.0001. Additionally the assay was associated with a mesenchymal phenotype (migration, invasion) and activated MAPK (phospho-MAPK) signalling in preclinical cell line models. The assay also predicted phospho-MEK expression in clinical samples (p < 0.05). The assay score was reduced by MEK inhibition (p < 0.05) and elevated by KRAS, NRAS and MEK1 overexpression (p < 0.05). The assay predicted response to the MEK inhibitors Trametinib and Selumetinib across cell line models from multiple diseases (p < 0.001) and to Trametinib in mouse xenograft studies of lung cancer cell lines. Conclusions: A 15 gene expression assay has been developed from FFPE samples across multiple diseases to detect a mesenchymal molecular subgroup associated with MAPK signalling. The assay predicted sensitivity to MEK inhibitors in pre-clinical cell line and mouse model systems. Further work aims to validate the assay as a predictive biomarker in clinical samples from patients treated with MEK targeted therapies.

Disclaimer

This material on this page is ©2024 American Society of Clinical Oncology, all rights reserved. Licensing available upon request. For more information, please contact licensing@asco.org

Abstract Details

Meeting

2018 ASCO Annual Meeting

Session Type

Poster Session

Session Title

Tumor Biology

Track

Tumor Biology

Sub Track

Tumor-Based Biomarkers

Citation

J Clin Oncol 36, 2018 (suppl; abstr 12111)

DOI

10.1200/JCO.2018.36.15_suppl.12111

Abstract #

12111

Poster Bd #

224

Abstract Disclosures

Similar Abstracts

First Author: Peter J. King

Abstract

2024 ASCO Genitourinary Cancers Symposium

MAPK pathway alterations as a targetable vulnerability in bladder cancer.

First Author: Vincent D'Andrea

First Author: Carl E. Allen