Hospital for Sick Children, Toronto, ON, Canada
Bryan Kincheon Li , Alexandre Vasiljevic , Ben Ho , Anne Jouvet , Eugene I. Hwang , Jordan R. Hansford , Annie Laquerriere , Marie-Bernadette Delisle , Sridharan Gururangan , Jason R. Fangusaro , Fabien Forest , Nobusawa Sumihito , Helen Toledano , Maryam Fouladi , Guillaume Gauchotte , David Simon Ziegler , Eric Bouffet , Richard G Grundy , Christelle Dufour , Annie A Huang
Background: Pineoblastoma (PB) is a rare but aggressive pediatric brain tumour arising from the pineal gland. Overall survival rates are estimated at 50-60%, with younger patients ( < 5 years old) faring much worse (15-40%) despite intensive treatment regimens. Although germline RB1 and DICER1 alterations have been reported in a small proportion of PB, the clinical significance of such alterations and the biology of sporadic cases remains unknown. Methods: We collected tumor tissue from 75 cases of PB diagnosed at their local centres from across five continents. We undertook global DNA methylation profiling and performed multiple orthogonal consensus clustering analyses to elucidate PB subgroups. Chromosomal copy number alterations were determined using Conumee then GISTIC 2.0. Mutational analysis was conducted by whole exome and RNA sequencing. Clinical data was analyzed with correlative statistical methods and outcomes were measured by Kaplan-Meier survival estimates. Results: We discovered that PBs comprise four molecular sub-types, designated groups 1 to 4, with characteristic copy number alterations and mutational patterns. These molecular sub-groups exhibit distinct clinical features and survival outcomes. While PB groups 1-3 arose in older children (median ages 5.2-12.6 years), group 4 PB was restricted to much younger children (median age 1.4 years). Group 4 PB exhibited the highest incidence of metastases (53%) and had the worst 5-year event-free survival (EFS) and overall survival (OS) at 7.7% and 16.7%, respectively. In contrast, group 2 patients had a 5-year EFS and OS of 100%, while groups 1 and 3 had intermediate outcomes (5-year EFS 36.1% and 53.3%, 5-year OS 68.1% and 53.3%, respectively). Conclusions: PBs divide into four groups, each with a distinct genetic and clinical profile. These findings will have important implications for precise patient stratification and form the foundation for preclinical studies of biology-informed therapies.
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