Mutation enrichment next-generation sequencing for quantitative detection of KRAS mutations in urine cell-free DNA from patients with advanced colorectal and other cancers.

Authors

Filip Janku

Filip Janku

Department of Investigational Cancer Therapeutics (Phase 1 Program), The University of Texas MD Anderson Cancer Center, Houston, TX

Filip Janku , Afsaneh Barzi , Andrea Sartore-Bianchi , Takeo Fujii , Andrea Cassingena , Giulia Siravegna , Daniel D. Karp , Sarina Anne Piha-Paul , Vivek Subbiah , Apostolia Maria Tsimberidou , Helen J. Huang , Silvio Veronese , Federica Di Nicolantonio , Mark G. Erlander , Rajyalakshmi Luthra , Scott Kopetz , Funda Meric-Bernstam , Salvatore Siena , Heinz-Josef Lenz , Alberto Bardelli

Organizations

Department of Investigational Cancer Therapeutics (Phase 1 Program), The University of Texas MD Anderson Cancer Center, Houston, TX, Division of Medical Oncology, USC Norris Comprehensive Cancer Center, Los Angeles, CA, Niguarda Cancer Center, Ospedale Niguarda Ca' Granda, Milano, Italy, The University of Texas MD Anderson Cancer Center, Houston, TX, Niguarda Cancer Center, Ospedale Niguarda Ca' Granda, Milan, Italy, Istituto di Candiolo, Fondazione del Piemonte per l'Oncologia, IRCCS, Candiolo, Italy, Department of Investigational Cancer Therapeutics (Phase I Program), University of Texas MD Anderson Cancer Center, Houston, TX, University of Turin, Candiolo, Italy, Trovagene, Inc., San Diego, CA, Department of Investigational Cancer Therapeutics (Phase 1 Program), Sheikh Khalifa Bin Zayed Al Nahyan Institute for Personalized Cancer Therapy, Department of Surgical Oncology, The University of Texas MD Anderson Cancer Center, Houston, TX, USC Norris Comprehensive Cancer Center, Los Angeles, CA

Research Funding

Other Foundation

Background: Molecular testing of cell-free (cf) DNA from urine is a completely non-invasive approach for detection of actionable mutations in cancer. Methods: A quantitative mutation enrichment next-generation sequencing (NGS) urine cell-free (cf) DNA KRASG12/G13mutation test was developed and results compared to clinical testing of archival tumor tissue and research testing of plasma cfDNA from patients with advanced colorectal (n=56, 79%) and other advanced cancers (n=15, 21%). Results: The analytical sensitivity of the KRASG12/G13 cfDNA test was 0.002%-0.006% mutant copies in wild-type background. In 71 patients, the agreement between urine cfDNA and tumor was 73% (sensitivity 63%; specificity 96%); the agreement increased to 89% for patients with recommended 90-110mL of urine. In 33 patients with available plasma samples, the agreement with tumor was 94% (sensitivity 92%; specificity 100%). In patients treated with systemic therapy there was lower number of KRASG12/G13 copies in urine and plasma cfDNA on therapy compared to baseline and progression (P<0.003). Decrease in urine and plasma cfDNA KRASG12/G13 copies on therapy compared to no change/increase was associated with longer median time to treatment failure (P<0.05). Conclusions: Mutation enrichment NGS detection of KRASG12/G13 mutations in urine cfDNA has good concordance with archival tumor tissue. Changes in urine cfDNA correspond with time to treatment failure.

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Abstract Details

Meeting

2017 Gastrointestinal Cancers Symposium

Session Type

Poster Session

Session Title

Poster Session C: Cancers of the Colon, Rectum, and Anus

Track

Cancers of the Colon, Rectum, and Anus

Sub Track

Translational Research

Citation

J Clin Oncol 35, 2017 (suppl 4S; abstract 602)

DOI

10.1200/JCO.2017.35.4_suppl.602

Abstract #

602

Poster Bd #

D20

Abstract Disclosures