Stanford University Cancer Institute, Stanford, CA
Allison W. Kurian , Elisha Hughes , Elizabeth Handorf , Alexander Gutin , Brian Allen , Anne-Renee Hartman , Michael J. Hall
Background: Multiple-gene germline sequencing panels are increasingly used to assess hereditary cancer risk, yet the magnitude of OC risk is not well defined for many genes on clinically available panels. Methods: 95,561 women were tested clinically for hereditary cancer risk with a panel of 25 genes: APC, ATM, BARD1, BMPR1A, BRCA1/2, BRIP1, CDH1, CDK4, CHEK2, MLH2, MSH2, MSH6, MYH, NBN, P14ARF, P16, PALB2, PMS2, PTEN, RAD51C, RAD51D, SMAD4, STK11, and TP53. Patients who had single- or founder-site testing, or prior BRCA1/2 testing, were excluded. Multivariable regression analysis was used to examine the association between pathogenic/suspected pathogenic mutations and personal OC history (Hx) (dependent variable). Independent variables were age, personal/family cancer Hx, and ancestry. Odds ratios (OR) with 95% confidence intervals (CI) excluding 1.0 were considered significant. Results: Mutations were detected in 6,775/95,561 (7%) patients, of which 3,007 (44%) were in BRCA1/2 and 3,768 (56%) in other genes. A significant association with personal OC Hx was found for ATM, BRCA1, BRCA2, BRIP1, MLH1, MSH2, MSH6, NBN, STK11, RAD51C and RAD51D (Table). Conclusions: Among nearly 100,000 women tested clinically for hereditary cancer risk, multiple-gene sequencing detected OC-associated mutations in 11 genes. Gene-specific estimates ranged from two (ATM, BRIP1, NBN, MSH2, MSH6) to > 10 (BRCA1, STK11) fold elevation in OC risk. These results inform the estimation of OC risk with mutations in 25 clinically tested genes.
Gene | OR (95%CI) for OC |
---|---|
STK11 | 41.9 (5.55, 315) |
BRCA1 | 11.8 (9.99, 14.0) |
BRCA2 | 5.26 (4.38, 6.31) |
RAD51C | 4.98 (3.09, 8.04) |
RAD51D | 4.78 (2.13, 10.7) |
MLH1 | 3.11 (1.47, 6.59) |
BRIP1 | 2.62 (1.72, 3.98) |
MSH2 | 2.04 (1.08, 3.84) |
MSH6 | 1.92 (1.19, 3.10) |
NBN | 1.85 (1.05, 3.24) |
ATM | 1.69 (1.19, 2.40) |
PALB2 | 1.60 (0.98, 2.60) |
PMS2 | 1.57 (0.94, 2.60) |
CHEK2 | 0.86 (0.56, 1.33) |
TP53 | 0.66 (0.05, 8.68) |
CDH1 | 0.63 (0.08, 4.93) |
BARD1 | 0.59 (0.21, 1.68) |
P16 | 0.56 (0.12, 2.53) |
APC | 0.36 (0.05, 2.77) |
MYH | 0.40 (0.05, 3.26) |
BMPR1A | * |
CDK4 | * |
P14ARF | * |
PTEN | * |
SMAD4 | * |
*Could not be estimated
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Abstract Disclosures
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