Derivation of gene expression classifiers for the non-invasive detection of bladder cancer in the hematuria and recurrence surveillance populations.

Authors

null

Karen B. Chapman

OncoCyte Corporation, Alameda, CA

Karen B. Chapman , Ljubomir Buturovic , Liqun Qiu , Jennifer Kidd , Nadia Sheibani , Damjan Krstajic , Lyssa Friedman , James L. Bailen , Igor Dumbadze , Daniel R. Saltzstein , Matthew T. Olson , Neal D. Shore

Organizations

OncoCyte Corporation, Alameda, CA, Clinical Persona, Inc., East Palo Alto, CA, Clinical Persona Inc., East Palo Alto, CA, First Urology Research, Louisville, KY, The Urology Group, Cincinnati, OH, Urology San Antonio, San Antonio, TX, Department of Pathology, Johns Hopkins University School of Medicine, Baltimore, MD, Carolina Urologic Research Center, Myrtle Beach, SC

Research Funding

Pharmaceutical/Biotech Company

Background: The detection of bladder cancer in patients presenting with hematuria or for recurrence surveillance is routinely accomplished with a combination of urine cytology and cystoscopy, each with its inherent limitations. Cystoscopy is an invasive procedure, whereas urine cytology lacks the desired level of sensitivity. This study describes the development of four gene expression classifiers (GECs) optimized for the non-invasive detection of both high-grade and low-grade urothelial carcinoma in patients presenting with hematuria or for bladder cancer recurrence surveillance. Methods: Biomarker identification was carried out via microarray analysis of patient urine samples collected at 9 sites in a training set (n=241) composed of urine samples from patients undergoing cystoscopy for hematuria or recurrence surveillance. Identified mRNA biomarkers (n=171) were transferred to the NanoString nCounter platform and an assay was developed that involves the direct analysis of urine sediment lysates, without mRNA purification. NanoString data collected on 261 patient samples was used to generate four GECs optimized for the detection high-grade and low-grade urothelial carcinoma in hematuria or recurrence surveillance patients. Results: The GEC developed for the detection of high-grade urothelial carcinoma in patients presenting with hematuria (n=123) performed with a cross-validated ROC AUC of 0.96, while the GEC for low-grade performed with an AUC of 0.81. In the recurrence surveillance cohort (n=120) the GEC developed for the detection of high-grade performed with an AUC = 0.86 and low-grade with an AUC = 0.61. Conclusions: These results establish the feasibility of using a urine-based gene expression classifier to detect urothelial carcinoma and also to distinguish between high-grade and low-grade. An ongoing multicenter clinical trial will allow us to validate test performance on a larger independent test set of prospectively collected urine samples.

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Abstract Details

Meeting

2016 ASCO Annual Meeting

Session Type

Poster Discussion Session

Session Title

Tumor Biology

Track

Tumor Biology

Sub Track

Molecular Diagnostics and Imaging

Citation

J Clin Oncol 34, 2016 (suppl; abstr 11522)

DOI

10.1200/JCO.2016.34.15_suppl.11522

Abstract #

11522

Poster Bd #

219

Abstract Disclosures

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