British Columbia Cancer Agency, Vancouver, BC, Canada
Karen A. Gelmon , Judy-Anne W. Chapman , Shuzhen Liu , Margot J. Burnell , Mark Norman Levine , Kathleen I. Pritchard , Timothy Joseph Whelan , Hope S. Rugo , Kathy S. Albain , Edith A. Perez , Shakeel Virk , Patti O'Brien , Lois E. Shepherd , Torsten O. Nielsen
Background: Breast cancer intrinsic subtypes defined by the 50-gene PAM50 test were reported to be prognostic and predictive in endocrine therapy trials. MA21 randomized 2,104 patients to receive dose intense cyclophosphamide, epirubicin and flurouracil (CEF); dose dense, dose intense epirubicin, cyclophosphamide and paclitaxel (EC/T); or 3-weekly doxorubicin, cyclophosphamide and paclitaxel (AC/T). We previously reported that AC/T had reduced relapse free survival (RFS) compared to both CEF and EC/T. Here, we investigated the prognostic and predictive (taxane versus not) significance of PAM50 in MA.21. Methods: Patients were ≤60 years old with node-positive or high-risk node-negative breast cancer. Median follow-up was 8 years. Intrinsic subtypes (luminal A, luminal B, basal-like, HER2E) were determined with FFPE extracted total RNA by Nanostring PAM50. Univariate assessment was with a stratified log-rank test. Effects of intrinsic subtypes and baseline patient characteristics on relapse-free survival (RFS) were investigated with stratified step-wise Cox multivariate regression, adding a factor if p<0.05. Results: The 1,094 cases completing PAM50 intrinsic subtyping were not significantly (p<0.05) different compared to those who did not in terms of treatment and stratification factors. 27% were classified as luminal A; 23% luminal B; 32% basal-like; and 18% HER2E. Intrinsic subtypes had a significant (p<0.001) univariate association with RFS. In multivariate analyses, intrinsic subtype had a significant prognostic effect on RFS (p= 0.001). Compared with luminal A, the hazard ratios (HR) were: luminal B =1.47 (95% CI = 0.93-2.30, p=0.10); basal-like= 1.95 (CI = 1.10-3.47, p=0.02); and HER2E = 2.66 (95% CI = 1.63-4.34, p<0.001). The interaction term between intrinsic subtype and treatment was not significant (p>0.05). Conclusions: Intrinsic subtype defined by the Nanostring PAM50 test had a significant prognostic effect on RFS for breast cancer patients treated with CEF, EC/T and AC/T. Subtype was not predictive of outcome amongst these chemotherapy regimens. Clinical trial information: NCT00014222.
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